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Species belonging to selected taxon:
Branchiostoma floridae
ABOUT THIS RECORD
ID:
MNEST024656
species:
Branchiostoma floridae
miRNA family:
mir-31
source:
miRBase, original name:
bfl-mir-31
(
MI0010017
)
Taxonomy by NCBI:
Branchiostoma floridae
Branchiostoma
Branchiostomidae
Cephalochordata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGCAAGATGTTGGCATAGCTGT
miRNA*
CGGCTGTGCTGACAAACTGCCATT
mismatches:
5
bulges:
1
View larger
pre-miRNA
TGACGGAGGGCGAGGAAA
TGGCAAGATGTTGGCATAGCTGT
TTGGAGTTCTGGGT
CGGCTGTGCTGACAAACTGCCATT
TCCCGTTCACTCCTATTACAA
C
dot-bracket secondary structure
....((((.(((.(((((
(((((...(((..((((((((((
(..(....)..)).
)))))))))..)))...)))))))
))))))...))))........
.
SIMILARITIES
miRBase
dre-mir-31
:
0.0000003
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-31: 2e-39
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M,
Evol Dev. 13:15-27(2011).
,
"microRNA complements in deuterostomes: origin and evolution of microRNAs"
[
2
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"